In Review, In Revision, and/or Preprints:

Muscarella ME, O’Dwyer JP (In Revision) Ecological insights from the evolutionary history of microbial innovations. bioRxiv preprint available, DOI:

Vandegrift R, Fahimipour AK, Muscarella ME, Bateman AC, Van Den Wymelenberg K, Bohannan BJM (In Revision) Moving microbes: the dynamics of transient microbial residence on human skin. bioRxiv preprint available , DOI:

Published or In Press: (* = non-peer-reviewed)

Peralta AL, Bledsoe RB, Muscarella ME, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IMA, Ivanova NN, Kyrpides NC, Del Rio TG, Eloe-Fadrosh EA (2020) Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina) Microbiology Resource Announcements 9 (41)

Muscarella ME, Howey XM, Lennon JT (2020) Trait‐based approach to bacterial growth efficiency. Environmental Microbiology, 22(8), 3494-3504

Muscarella ME, O’Dwyer JP (2020) Species dynamics and interactions via metabolically informed consumer-resource models. Theoretical Ecology, 1-16

Johnson WM, Alexander H, Bier RL, Miller DR, Muscarella ME, Pitz KJ, Smith H (2020) Auxotrophic interactions: A stabilizing attribute of aquatic microbial communities? FEMS Microbiology Ecology, fiaa115

Locey KJ, Muscarella ME, Larsen ML, Bray SR, Jones SE, Lennon JT (2020) Dormancy dampens the microbial distance-decay relationship. Phil. Trans. R. Soc., B37520190243

Wisnoski NI, Muscarella ME, Larsen ML, Peralta AL, Lennon JT (2020) Metabolic insight into bacterial community assembly across ecosystem boundaries Ecology, 00( 00):e02968

Muscarella ME, Boot CM, Broeckling CD, Lennon JT (2019) Resource heterogeneity structures aquatic bacterial communities. The ISME Journal, 13:2183–2195

Lennon JT, Muscarella ME, Placella SA, Lehmkuhl, BK (2018) How, When, and Where Relic DNA Affects Microbial Diversity. mBio, 9(3):e00637-18

Aanderud ZT, Saurey S, Ball BA, Wall DH, Barrett JE, Muscarella ME, Griffin NA, Virginia RA, Adams BJ (2018) Stoichiometric shifts in soil C:N:P promotes bacterial taxa dominance, maintains biodiversity, and deconstructs community assemblages. Frontiers in Microbiology, 9:1401

Long H, Sung W, Kucukyildirim S, Williams E, Miller S, Guo W, Patterson C, Gregory C, Strauss C, Stone C, Berne C, Kysela D, Shoemaker WR, Muscarella ME, Luo H, Lennon JT, Brun YV, Lynch M (2018) Evolutionary determinants of genome-wide nucleotide composition. Nature Ecology \& Evolution, 2(2):237-240

Peralta AL, Muscarella ME, Mathews JW (2017) Lingering land use legacies after different wetland restoration strategies. Elementa: Science of the Anthropocene, 5:74

Kuo V, Shoemaker WR, Muscarella ME, Lennon JT (2017) Whole-genome sequence of the soil bacterium Micrococcus sp. KBS0714. Genome announcements, 5(32):e00697-17

Kelly PT, Bell T, Reisinger AJ, Spanbauer T, Bortolotti L, Brentrup J, Briseno-Avena C, Dong X, Flanagan A, Follett E, Grosse J, Guy-Haim T, Holgerson MA, Hovel R, Luo J, Millette N, Mine A, Muscarella ME, Oliver S, Smith H (2017) Ecological Dissertations in the Aquatic Sciences (Eco-DAS): An effective networking and professional development opportunity for early career aquatic scientists. Limnology and Oceanography Bulletin, 26(2):25-30

Guy-Haim T, Alexander H, Bell TW, Bier RL, Bortolotti LE, Briseno-Avena C, Dong X, Flanagan AM, Grosse J, Grossmann L, Hasnain S, Hovel R, Johnston CA, Miller DR, Muscarella ME, Noto AE, Reisinger AJ, Smith HJ, Stamieszkin K (2017) What are the type, direction, and strength of species, community, and ecosystem responses to warming in aquatic mesocosm studies and their dependency on experimental characteristics? A systematic review protocol. Environmental Evidence, 6(1):6

Muscarella ME, Jones SE, Lennon JT (2016) Species sorting along a subsidy gradient alters bacterial community stability. Ecology, 97(8):2034-2043

Shoemaker WR, Muscarella ME, Lennon JT (2015) Genome sequence of the soil bacterium Janthinobacterium sp. KBS071. Genome Announcements, 3(3):e00689-15

Muscarella ME, Bird KC, Larsen ML, Placella SA, Lennon JT (2014) Phosphorus resource heterogeneity affects the structure and function of microbial food webs. Aquatic Microbial Ecology, 73(3):259-272

Lennon JT, Hamilton SK, Muscarella ME, Grandy AS, Wickings K, Jones SE (2013) A source of terrestrial organic carbon to investigate the browning of aquatic ecosystems. PLoS ONE, 8(10):e75771

Awong-Taylor J, Craven K, Griffiths L, Bass C, Muscarella ME (2008) Comparison of biochemical and molecular methods for the identification of bacterial isolates associated with failed loggerhead sea turtle eggs. Journal of Applied Microbiology, 104:1244-1251

Craven KS, Awong-Taylor J, Griffiths L, Bass C, Muscarella ME (2007) Identification of bacterial isolates from unhatched loggerhead (Caretta caretta) sea turtle eggs in Georgia, USA. Marine Turtle Newsletter, 115:9-11